STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoE_6RNA polymerase sigma-70 factor, ECF subfamily. (183 aa)    
Predicted Functional Partners:
rpoE_3
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.764
sigX_2
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.759
rpoE_5
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
SIQ84168.1
Hypothetical protein.
       0.728
SIQ84133.1
Hypothetical protein.
       0.724
sigM
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.645
SIQ50572.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.583
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase).
       0.514
SIQ84070.1
Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains.
       0.514
sigX_3
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.475
Your Current Organism:
Chryseobacterium indoltheticum
NCBI taxonomy Id: 254
Other names: ATCC 27950, Beneckea indolthetica, C. indoltheticum, CCUG 33445, CIP 103168, Chryseobacterium indolitheticum, Flavobacterium indoltheticum, LMG 4025, LMG:4025
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.