STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ91915.1Transcriptional regulator, AlpA family. (93 aa)    
Predicted Functional Partners:
SIQ96479.1
Site-specific recombinase XerD.
  
   
 0.735
maeB_3
Allosteric NADP-dependent malic enzyme.
     
 0.555
SIQ92020.1
Toprim-like.
 
   
 0.545
SIQ91941.1
Protein of unknown function.
       0.529
xerC_4
Phage integrase SAM-like domain-containing protein; Belongs to the 'phage' integrase family.
  
   
 0.480
SIQ91970.1
Hypothetical protein.
  
    0.438
SIR32579.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Chryseobacterium indoltheticum
NCBI taxonomy Id: 254
Other names: ATCC 27950, Beneckea indolthetica, C. indoltheticum, CCUG 33445, CIP 103168, Chryseobacterium indolitheticum, Flavobacterium indoltheticum, LMG 4025, LMG:4025
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.