Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIR00033.1 | SIR00074.1 | SAMN05421682_11115 | SAMN05421682_11116 | Uncharacterized conserved protein GlcG, DUF336 family. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.511 |
SIR00033.1 | SIR00116.1 | SAMN05421682_11115 | SAMN05421682_11117 | Uncharacterized conserved protein GlcG, DUF336 family. | Hypothetical protein. | 0.412 |
SIR00033.1 | aceB | SAMN05421682_11115 | SAMN05421682_10780 | Uncharacterized conserved protein GlcG, DUF336 family. | Malate synthase; Belongs to the malate synthase family. | 0.431 |
SIR00033.1 | yvqK | SAMN05421682_11115 | SAMN05421682_11317 | Uncharacterized conserved protein GlcG, DUF336 family. | cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. | 0.769 |
SIR00074.1 | SIR00033.1 | SAMN05421682_11116 | SAMN05421682_11115 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | Uncharacterized conserved protein GlcG, DUF336 family. | 0.511 |
SIR00074.1 | SIR00116.1 | SAMN05421682_11116 | SAMN05421682_11117 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | Hypothetical protein. | 0.605 |
SIR00116.1 | SIR00033.1 | SAMN05421682_11117 | SAMN05421682_11115 | Hypothetical protein. | Uncharacterized conserved protein GlcG, DUF336 family. | 0.412 |
SIR00116.1 | SIR00074.1 | SAMN05421682_11117 | SAMN05421682_11116 | Hypothetical protein. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.605 |
aceB | SIR00033.1 | SAMN05421682_10780 | SAMN05421682_11115 | Malate synthase; Belongs to the malate synthase family. | Uncharacterized conserved protein GlcG, DUF336 family. | 0.431 |
yvqK | SIR00033.1 | SAMN05421682_11317 | SAMN05421682_11115 | cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. | Uncharacterized conserved protein GlcG, DUF336 family. | 0.769 |