STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR14892.1Capsular exopolysaccharide family. (786 aa)    
Predicted Functional Partners:
SIR07624.1
Protein involved in gliding motility EpsA.
 
 0.999
SIR15420.1
Polysaccharide export outer membrane protein.
 
 0.999
SIR14938.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.958
wcaJ_4
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.950
wcaJ_1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.935
SIR15028.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.920
capD_1
UDP-glucose 4-epimerase; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.902
capD_2
UDP-glucose 4-epimerase.
  
 
 0.877
SIR14867.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.719
ptk_1
Protein involved in gliding motility EpsB.
 
 
0.715
Your Current Organism:
Chryseobacterium indoltheticum
NCBI taxonomy Id: 254
Other names: ATCC 27950, Beneckea indolthetica, C. indoltheticum, CCUG 33445, CIP 103168, Chryseobacterium indolitheticum, Flavobacterium indoltheticum, LMG 4025, LMG:4025
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.