STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM44408.1Hypothetical protein. (594 aa)    
Predicted Functional Partners:
SFM44435.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.831
SFL84706.1
Hypothetical protein.
  
     0.745
SFM23681.1
Hypothetical protein.
  
     0.730
SFM60469.1
Hypothetical protein.
  
     0.730
SFM92376.1
Hypothetical protein.
  
     0.723
SFM53738.1
Chemosensory pili system protein ChpC.
  
     0.697
SFM40056.1
Hypothetical protein.
  
     0.687
SFM58404.1
Pilus assembly protein FimV.
  
     0.686
SFM13416.1
Hypothetical protein.
  
     0.657
SFL69397.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.629
Your Current Organism:
Pseudomonas pachastrellae
NCBI taxonomy Id: 254161
Other names: CCUG 46540, JCM 12285, KMM 330, NRIC 0583, P. pachastrellae, Pseudomonas pachastrellae Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.