STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM91499.1Hypothetical protein. (174 aa)    
Predicted Functional Partners:
SFM91522.1
Major Facilitator Superfamily protein.
     0.989
SFL80781.1
Homoserine dehydrogenase.
   
  0.698
SFM69162.1
Chorismate mutase.
   
 
 0.663
SFM73466.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.663
SFM91540.1
Endoribonuclease L-PSP.
       0.592
SFM91560.1
Hypothetical protein.
       0.568
Your Current Organism:
Pseudomonas pachastrellae
NCBI taxonomy Id: 254161
Other names: CCUG 46540, JCM 12285, KMM 330, NRIC 0583, P. pachastrellae, Pseudomonas pachastrellae Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.