STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM93907.1CRISPR-associated protein Csx16. (97 aa)    
Predicted Functional Partners:
SFM93962.1
CRISPR-associated protein, NE0113 family.
 
     0.794
SFM94192.1
Protein of unknown function.
 
   
 0.721
SFM93734.1
Hypothetical protein.
 
   
 0.651
SFM93793.1
Hypothetical protein.
 
   
 0.604
cas1
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.601
SFM93763.1
RAMP superfamily protein.
 
     0.561
SFM93876.1
CRISPR-associated protein.
 
     0.526
SFM93820.1
CRISPR/Cas system CSM-associated protein Csm3, group 7 of RAMP superfamily.
       0.482
SFM93707.1
Uncharacterized conserved protein.
       0.446
SFM93847.1
Hypothetical protein.
       0.446
Your Current Organism:
Pseudomonas pachastrellae
NCBI taxonomy Id: 254161
Other names: CCUG 46540, JCM 12285, KMM 330, NRIC 0583, P. pachastrellae, Pseudomonas pachastrellae Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.