STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM03877.1Hypothetical protein. (452 aa)    
Predicted Functional Partners:
SFM03853.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.974
SFM56064.1
Outer membrane protein, adhesin transport system.
  
 0.922
SFL55474.1
Outer membrane protein.
  
 0.918
SFM03901.1
Transcriptional regulator, TetR family.
 
     0.831
SFM03827.1
Hypothetical protein.
       0.773
SFM03926.1
Hypothetical protein.
 
     0.718
SFL47758.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.692
SFM34180.1
ABC-type multidrug transport system, ATPase and permease component.
  
 0.649
SFM56028.1
ATP-binding cassette, subfamily C, LapB.
  
 0.649
SFM11777.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.645
Your Current Organism:
Shimia aestuarii
NCBI taxonomy Id: 254406
Other names: DSM 15283, IMSNU 14011, JCM 14332, KCTC 12049, Rhodobacteraceae bacterium JC2049, S. aestuarii, Thalassobius aestuarii, Thalassobius aestuarii Yi and Chun 2007, strain JC2049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.