STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM05092.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (320 aa)    
Predicted Functional Partners:
SFM05116.1
Polar amino acid transport system substrate-binding protein.
 
     0.814
SFM05219.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.746
SFM05170.1
Polar amino acid transport system permease protein.
 
     0.640
SFM05140.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
     0.636
SFM05299.1
Acetylornithine deacetylase.
 
     0.562
SFM05196.1
Polar amino acid transport system ATP-binding protein.
 
     0.550
SFM41701.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.472
SFM05364.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.440
SFM78668.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.429
SFM31430.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.403
Your Current Organism:
Shimia aestuarii
NCBI taxonomy Id: 254406
Other names: DSM 15283, IMSNU 14011, JCM 14332, KCTC 12049, Rhodobacteraceae bacterium JC2049, S. aestuarii, Thalassobius aestuarii, Thalassobius aestuarii Yi and Chun 2007, strain JC2049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.