STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001439965_00853Unannotated protein. (648 aa)    
Predicted Functional Partners:
GCA_001439965_00852
Unannotated protein.
 
     0.947
GCA_001439965_03314
Unannotated protein.
 
  
 0.790
GCA_001439965_00851
Unannotated protein.
       0.785
GCA_001439965_00854
Unannotated protein.
       0.615
GCA_001439965_00850
Unannotated protein.
       0.596
GCA_001439965_00855
Unannotated protein.
       0.595
GCA_001439965_00869
Unannotated protein.
    
 0.577
GCA_001439965_03103
Unannotated protein.
 
  
 0.571
GCA_001439965_03268
Unannotated protein.
  
     0.516
GCA_001439965_00225
Unannotated protein.
    
 0.504
Your Current Organism:
Bacillus farraginis
NCBI taxonomy Id: 254757
Other names: B. farraginis, Bacillus farraginis Scheldeman et al. 2004, DSM 16013, LMG 22081, LMG:22081, strain R-6540
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.