STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001439965_01727Unannotated protein. (183 aa)    
Predicted Functional Partners:
GCA_001439965_01726
Unannotated protein.
       0.801
GCA_001439965_01728
Unannotated protein.
       0.770
GCA_001439965_02451
Unannotated protein.
   
  0.666
GCA_001439965_00767
Unannotated protein.
    
  0.661
GCA_001439965_01764
Unannotated protein.
    
  0.661
GCA_001439965_04014
Unannotated protein.
    
  0.656
GCA_001439965_04755
Unannotated protein.
    
  0.656
GCA_001439965_01729
Unannotated protein.
       0.639
GCA_001439965_01730
Unannotated protein.
       0.639
GCA_001439965_03510
Unannotated protein.
  
 
 0.477
Your Current Organism:
Bacillus farraginis
NCBI taxonomy Id: 254757
Other names: B. farraginis, Bacillus farraginis Scheldeman et al. 2004, DSM 16013, LMG 22081, LMG:22081, strain R-6540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.