STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001439965_04135Unannotated protein. (180 aa)    
Predicted Functional Partners:
GCA_001439965_04136
Unannotated protein.
       0.773
GCA_001439965_04137
Unannotated protein.
       0.762
GCA_001439965_04138
Unannotated protein.
       0.762
GCA_001439965_04142
Unannotated protein.
  
    0.753
GCA_001439965_04143
Unannotated protein.
       0.753
GCA_001439965_04146
Unannotated protein.
       0.753
GCA_001439965_04145
Unannotated protein.
       0.752
GCA_001439965_04144
Unannotated protein.
       0.750
GCA_001439965_04140
Unannotated protein.
       0.744
GCA_001439965_04147
Unannotated protein.
  
    0.742
Your Current Organism:
Bacillus farraginis
NCBI taxonomy Id: 254757
Other names: B. farraginis, Bacillus farraginis Scheldeman et al. 2004, DSM 16013, LMG 22081, LMG:22081, strain R-6540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.