STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001439965_04815Unannotated protein. (90 aa)    
Predicted Functional Partners:
GCA_001439965_01673
Unannotated protein.
  
     0.556
GCA_001439965_04811
Unannotated protein.
       0.532
GCA_001439965_04812
Unannotated protein.
       0.532
GCA_001439965_04813
Unannotated protein.
       0.532
GCA_001439965_04814
Unannotated protein.
       0.532
GCA_001439965_04809
Unannotated protein.
       0.516
GCA_001439965_04810
Unannotated protein.
       0.516
GCA_001439965_00665
Unannotated protein.
  
     0.509
GCA_001439965_03071
Unannotated protein.
  
     0.495
GCA_001439965_00396
Unannotated protein.
 
     0.476
Your Current Organism:
Bacillus farraginis
NCBI taxonomy Id: 254757
Other names: B. farraginis, Bacillus farraginis Scheldeman et al. 2004, DSM 16013, LMG 22081, LMG:22081, strain R-6540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.