STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1V6SQL2Fe2OG dioxygenase domain-containing protein. (230 aa)    
Predicted Functional Partners:
A0A1V6SM66
Uncharacterized protein.
   
 0.991
A0A1V6TK60
Methyltransf_11 domain-containing protein.
 
    
 0.935
A0A1V6TXH6
Glyco_hydro_79C domain-containing protein.
     
  0.816
A0A1V6SXT6
Uncharacterized protein.
   
 
 0.813
A0A1V6T4W8
UPF0020 domain-containing protein.
   
 
 0.808
A0A1V6TSD7
Fe2OG dioxygenase domain-containing protein.
   
  
 0.781
NCS6
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.
   
 
 0.767
A0A1V6T3S4
PlsC domain-containing protein.
     
  0.710
A0A1V6TWP1
Fe2OG dioxygenase domain-containing protein.
   
  
 0.693
A0A1V6TI25
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  0.691
Your Current Organism:
Penicillium flavigenum
NCBI taxonomy Id: 254877
Other names: CBS 419.89, IBT 21526, IBT 3091, IBT V1035, IMI 293207, P. flavigenum
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