A0A1V6T4A6 protein (Penicillium flavigenum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6T4A6

COesterase domain-containing protein. (550 aa)

Predicted Functional Partners:

A0A1V6SGV8

0.759

A0A1V6SL51

0.738

A0A1V6TZD5

0.715

A0A1V6U1H0

0.715

A0A1V6SYC4

0.711

A0A1V6SGE3

0.710

A0A1V6SS49

0.710

A0A1V6SG00

0.709

A0A1V6SHC6

0.709

A0A1V6SLT9

0.709

Your Current Organism:

Penicillium flavigenum

NCBI taxonomy Id: 254877
Other names: CBS 419.89, IBT 21526, IBT 3091, IBT V1035, IMI 293207, P. flavigenum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6SG00	A0A1V6SGE3	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
A0A1V6SG00	A0A1V6SGV8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Utp12 domain-containing protein.	0.994
A0A1V6SG00	A0A1V6SHC6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	CBF domain-containing protein.	0.999
A0A1V6SG00	A0A1V6SL51	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DRIM domain-containing protein.	0.999
A0A1V6SG00	A0A1V6SLT9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.996
A0A1V6SG00	A0A1V6SS49	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
A0A1V6SG00	A0A1V6SYC4	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.993
A0A1V6SG00	A0A1V6T4A6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	COesterase domain-containing protein.	0.709
A0A1V6SGE3	A0A1V6SG00	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
A0A1V6SGE3	A0A1V6SGV8	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Utp12 domain-containing protein.	0.961
A0A1V6SGE3	A0A1V6SHC6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	CBF domain-containing protein.	0.997
A0A1V6SGE3	A0A1V6SL51	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	DRIM domain-containing protein.	0.997
A0A1V6SGE3	A0A1V6SLT9	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	WD_REPEATS_REGION domain-containing protein.	0.961
A0A1V6SGE3	A0A1V6SS49	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein.	0.997
A0A1V6SGE3	A0A1V6SYC4	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	WD_REPEATS_REGION domain-containing protein.	0.959
A0A1V6SGE3	A0A1V6T4A6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	COesterase domain-containing protein.	0.710
A0A1V6SGV8	A0A1V6SG00	Utp12 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.994
A0A1V6SGV8	A0A1V6SGE3	Utp12 domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.961
A0A1V6SGV8	A0A1V6SHC6	Utp12 domain-containing protein.	CBF domain-containing protein.	0.997
A0A1V6SGV8	A0A1V6SL51	Utp12 domain-containing protein.	DRIM domain-containing protein.	0.990