A0A1V6TV95 protein (Penicillium flavigenum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6TV95

Uncharacterized protein. (354 aa)

Predicted Functional Partners:

A0A1V6SWN4

0.891

A0A1V6SL89

0.885

A0A1V6TL25

0.848

A0A1V6U2R8

0.822

A0A1V6SX08

0.816

A0A1V6T345

0.815

A0A1V6T8N9

0.815

A0A1V6SG16

0.814

A0A1V6SJP1

0.812

A0A1V6SJS4

0.805

Your Current Organism:

Penicillium flavigenum

NCBI taxonomy Id: 254877
Other names: CBS 419.89, IBT 21526, IBT 3091, IBT V1035, IMI 293207, P. flavigenum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6SG16	A0A1V6SJP1	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.990
A0A1V6SG16	A0A1V6SJS4	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein.	0.991
A0A1V6SG16	A0A1V6SL89	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.876
A0A1V6SG16	A0A1V6SWN4	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A1V6SG16	A0A1V6SX08	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.989
A0A1V6SG16	A0A1V6T345	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Peptidase S59 domain-containing protein.	0.987
A0A1V6SG16	A0A1V6T8N9	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.958
A0A1V6SG16	A0A1V6TL25	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A1V6SG16	A0A1V6TV95	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.814
A0A1V6SG16	A0A1V6U2R8	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.979
A0A1V6SJP1	A0A1V6SG16	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.990
A0A1V6SJP1	A0A1V6SJS4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
A0A1V6SJP1	A0A1V6SL89	Uncharacterized protein.	Uncharacterized protein.	0.870
A0A1V6SJP1	A0A1V6SWN4	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.992
A0A1V6SJP1	A0A1V6SX08	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6SJP1	A0A1V6T345	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.996
A0A1V6SJP1	A0A1V6T8N9	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A1V6SJP1	A0A1V6TL25	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.998
A0A1V6SJP1	A0A1V6TV95	Uncharacterized protein.	Uncharacterized protein.	0.812
A0A1V6SJP1	A0A1V6U2R8	Uncharacterized protein.	Uncharacterized protein.	0.999