STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR83005.1ATP-binding cassette, subfamily B. (602 aa)    
Predicted Functional Partners:
SDS99970.1
ATP-binding cassette, subfamily B, HlyB/CyaB.
 
 
0.928
SDS53964.1
Probable Rubsico expression protein CbbX.
   
 0.910
SDT37524.1
ATP-dependent Clp protease adaptor protein ClpS.
  
 
 0.891
SDT58799.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.870
SDS43399.1
ATP-binding cassette, subfamily B.
  
 
0.865
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.744
SDS78875.1
Molecular chaperone DnaK.
  
 0.727
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 
 0.723
SDT57157.1
Cu-processing system ATP-binding protein.
  
0.706
SDR84090.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.699
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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