STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR85621.1Outer membrane receptor proteins, mostly Fe transport; Manually curated. (710 aa)    
Predicted Functional Partners:
SDS03704.1
Hypothetical protein.
  
 
 0.884
SDS39893.1
Outer membrane transport energization protein TonB.
  
 
 0.884
SDT42908.1
Cell division and transport-associated protein TolA.
  
 
 0.884
SDS31297.1
MbeD/MobD like protein.
  
 
 0.794
SDS60536.1
Hypothetical protein.
  
 
 0.794
SDT55735.1
Hypothetical protein.
  
 
 0.794
SDS91012.1
Collagen triple helix repeat-containing protein.
  
 
 
 0.788
SDS34020.1
Autotransporter beta-domain-containing protein.
    
 
 0.778
SDT08027.1
Hypothetical protein.
  
 
 
 0.775
SDS25756.1
Collagen triple helix repeat-containing protein.
    
 
 0.745
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.