STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS06637.1Uncharacterized conserved protein, LabA/DUF88 family. (209 aa)    
Predicted Functional Partners:
SDS06615.1
uracil-DNA glycosylase, family 4.
       0.791
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.741
SDS06577.1
Hypothetical protein.
       0.732
SDT33587.1
Methyltransferase domain-containing protein.
  
     0.611
SDS77942.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.521
SDS66381.1
Helix-turn-helix.
  
     0.520
SDT52855.1
Metal dependent phosphohydrolase.
  
     0.492
SDS34526.1
DNA polymerase III, chi subunit.
  
     0.486
SDS07570.1
Transcriptional regulator, MarR family.
  
     0.477
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.473
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.