Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS05347.1 | SDS19402.1 | SAMN05444158_0852 | SAMN05444158_1301 | DNA topoisomerase I. | ATP-dependent DNA helicase RecG. | 0.758 |
SDS05347.1 | SDS28319.1 | SAMN05444158_0852 | SAMN05444158_1577 | DNA topoisomerase I. | Exonuclease RecJ. | 0.735 |
SDS05347.1 | dnaA | SAMN05444158_0852 | SAMN05444158_5373 | DNA topoisomerase I. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.550 |
SDS05347.1 | dnaG | SAMN05444158_0852 | SAMN05444158_6132 | DNA topoisomerase I. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.503 |
SDS05347.1 | polA | SAMN05444158_0852 | SAMN05444158_5647 | DNA topoisomerase I. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.979 |
SDS05347.1 | recF | SAMN05444158_0852 | SAMN05444158_5370 | DNA topoisomerase I. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.638 |
SDS05347.1 | recR | SAMN05444158_0852 | SAMN05444158_5662 | DNA topoisomerase I. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.677 |
SDS05347.1 | ruvA | SAMN05444158_0852 | SAMN05444158_5951 | DNA topoisomerase I. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.444 |
SDS05347.1 | ruvB | SAMN05444158_0852 | SAMN05444158_5952 | DNA topoisomerase I. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.465 |
SDS19402.1 | SDS05347.1 | SAMN05444158_1301 | SAMN05444158_0852 | ATP-dependent DNA helicase RecG. | DNA topoisomerase I. | 0.758 |
SDS19402.1 | SDS28319.1 | SAMN05444158_1301 | SAMN05444158_1577 | ATP-dependent DNA helicase RecG. | Exonuclease RecJ. | 0.742 |
SDS19402.1 | dnaA | SAMN05444158_1301 | SAMN05444158_5373 | ATP-dependent DNA helicase RecG. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.664 |
SDS19402.1 | dnaG | SAMN05444158_1301 | SAMN05444158_6132 | ATP-dependent DNA helicase RecG. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.680 |
SDS19402.1 | murA | SAMN05444158_1301 | SAMN05444158_5368 | ATP-dependent DNA helicase RecG. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.675 |
SDS19402.1 | polA | SAMN05444158_1301 | SAMN05444158_5647 | ATP-dependent DNA helicase RecG. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.783 |
SDS19402.1 | recF | SAMN05444158_1301 | SAMN05444158_5370 | ATP-dependent DNA helicase RecG. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.636 |
SDS19402.1 | recR | SAMN05444158_1301 | SAMN05444158_5662 | ATP-dependent DNA helicase RecG. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.661 |
SDS19402.1 | ruvA | SAMN05444158_1301 | SAMN05444158_5951 | ATP-dependent DNA helicase RecG. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.707 |
SDS19402.1 | ruvB | SAMN05444158_1301 | SAMN05444158_5952 | ATP-dependent DNA helicase RecG. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.656 |
SDS28319.1 | SDS05347.1 | SAMN05444158_1577 | SAMN05444158_0852 | Exonuclease RecJ. | DNA topoisomerase I. | 0.735 |
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