STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS48580.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (281 aa)    
Predicted Functional Partners:
SDS48686.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
  
 
 0.775
SDS48611.1
L-alanine-DL-glutamate epimerase.
  
    0.667
SDS48535.1
Phosphoglycerate dehydrogenase.
    
  0.660
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.650
SDS48639.1
NitT/TauT family transport system substrate-binding protein.
  
    0.578
SDS48563.1
Transcriptional regulator, GntR family.
  
    0.516
SDS62123.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
 
 0.512
SDS48432.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.509
SDS48454.1
NitT/TauT family transport system permease protein.
       0.509
SDS48497.1
NitT/TauT family transport system ATP-binding protein.
       0.509
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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