STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS60912.13',5'-cyclic AMP phosphodiesterase CpdA. (316 aa)    
Predicted Functional Partners:
SDS60987.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
 
     0.928
SDS21279.1
Signal transduction histidine kinase.
 
 
 0.920
SDS60940.1
Plastocyanin.
 
     0.902
SDS72935.1
Ankyrin repeat.
    
 0.855
SDS31024.1
Signal transduction histidine kinase.
  
 
 0.764
SDS60973.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.697
SDT55637.1
5'-nucleotidase.
   
 
 0.693
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
    
  0.676
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
     
 0.675
SDT22420.1
Adenylate cyclase, class 3.
    
 0.614
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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