STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS63325.13-hydroxyisobutyrate dehydrogenase. (304 aa)    
Predicted Functional Partners:
SDS63251.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
  
 0.866
SDS63282.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.866
SDS82591.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.807
SDS63330.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
    0.691
SDR94296.1
Tartronate-semialdehyde synthase; Belongs to the TPP enzyme family.
 
 
 0.634
SDT07058.1
Hypothetical protein.
  
  
 
0.587
SDT22955.1
3-hydroxyisobutyrate dehydrogenase.
  
  
 
0.580
SDS38859.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
  
 
0.570
SDR89808.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.567
SDS68673.1
3-hydroxyisobutyrate dehydrogenase.
  
  
 
0.564
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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