STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS79874.12,5-dihydroxypyridine 5,6-dioxygenase. (350 aa)    
Predicted Functional Partners:
SDS79895.1
N-formylmaleamate deformylase.
 
  
  0.952
SDS79974.1
Salicylate hydroxylase.
 
 
 0.874
SDS79934.1
Isochorismate hydrolase.
 
     0.837
SDS51277.1
N-formylmaleamate deformylase.
 
  
  0.836
SDS51249.1
Maleate isomerase.
 
  
 0.813
SDS79993.1
Carbon-monoxide dehydrogenase small subunit.
  
    0.775
SDS80010.1
Carbon-monoxide dehydrogenase medium subunit.
       0.773
SDS80045.1
Carbon monoxide dehydrogenase subunit G.
       0.773
SDS80065.1
CO or xanthine dehydrogenase, Mo-binding subunit.
       0.737
SDR99068.1
6-hydroxynicotinate 3-monooxygenase.
 
 
 0.568
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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