STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS80842.1Transcriptional regulator, AraC family. (296 aa)    
Predicted Functional Partners:
SDS82591.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.747
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.662
SDS21279.1
Signal transduction histidine kinase.
    
 0.596
SDS96815.1
Glutamate synthase (NADH) large subunit.
    
  0.505
SDT55316.1
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.493
SDS80815.1
NitT/TauT family transport system substrate-binding protein.
       0.486
SDS33924.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.480
SDT52244.1
Anthranilate synthase, component I.
     
 0.473
SDS80786.1
Acetyl-CoA acetyltransferase.
    
  0.427
SDR86091.1
Flagellar basal-body rod protein FlgF/flagellar basal-body rod protein FlgG.
    
   0.400
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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