STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS81234.1Type IV secretion system protein VirB4. (813 aa)    
Predicted Functional Partners:
SDS81069.1
Type IV secretion system protein VirB10.
 
 0.999
SDS81095.1
Type IV secretion system protein VirB9.
 
 
 0.999
SDS81299.1
Type IV secretion system protein VirB2.
 
 
 0.995
SDS81120.1
Type IV secretion system protein VirB5.
 
  
 0.993
SDS81149.1
Type IV secretion system protein TrbL.
 
  
 0.993
SDS81201.1
P-type conjugative transfer protein TrbJ.
 
  
 0.993
SDS81271.1
Type IV secretion system protein VirB3.
 
  
 0.992
SDS81332.1
Type IV secretion system protein VirB11.
 
  
 0.992
SDS81043.1
Hypothetical protein.
 
     0.950
SDS81751.1
Type IV secretion system protein VirD4.
 
  
 0.829
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.