STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS87247.1Hypothetical protein; Belongs to the cytochrome P450 family. (409 aa)    
Predicted Functional Partners:
SDT58799.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.988
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.912
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.897
SDR84372.1
Ferredoxin, 2Fe-2S.
 
 0.875
SDS72029.1
Hypothetical protein.
  
 0.864
SDS48166.1
Vanillate O-demethylase ferredoxin subunit.
 0.852
SDS21220.1
Undecaprenyl-diphosphatase.
    
  0.839
SDS25383.1
Undecaprenyl-diphosphatase.
    
  0.839
SDT59942.1
Glycosyltransferase, MGT family.
  
 0.818
SDT54740.1
Ferredoxin-NADP reductase.
 
 0.771
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.