STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS99367.1Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. (484 aa)    
Predicted Functional Partners:
SDS99408.1
Exopolysaccharide transport protein family.
 
 
 0.945
SDT59491.1
Capsular exopolysaccharide family.
 
 
 0.945
SDT58257.1
Exopolysaccharide transport protein family.
 
 
 0.942
cpsB
Mannose-1-phosphate guanylyltransferase (GDP).
  
 
 0.921
SDS94269.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.919
SDS09072.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.908
SDS99655.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.830
SDT31744.1
Polysaccharide export outer membrane protein.
 
 
 0.801
SDS09010.1
Polysaccharide export outer membrane protein.
 
 
 0.800
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.732
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.