STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT20801.1Diguanylate cyclase/phosphodiesterase. (898 aa)    
Predicted Functional Partners:
SDS21279.1
Signal transduction histidine kinase.
  
 0.998
SDS31024.1
Signal transduction histidine kinase.
  
 0.987
SDS94441.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.985
SDT28484.1
PAS domain S-box-containing protein.
 
 0.978
SDT14295.1
Na+/proline symporter.
  
 0.955
SDS03385.1
PAS/PAC sensor hybrid histidine kinase.
 
 0.951
SDT32509.1
PAS domain S-box-containing protein.
  
 0.951
SDR86780.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
   
 0.949
SDR90263.1
PAS domain S-box-containing protein.
   
 0.949
SDT33444.1
Diguanylate cyclase/phosphodiesterase.
 
0.949
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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