Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDR83897.1 | SDS72935.1 | SAMN05444158_0161 | SAMN05444158_2995 | Hydroxymethylpyrimidine kinase. | Ankyrin repeat. | 0.518 |
SDR83897.1 | SDS90468.1 | SAMN05444158_0161 | SAMN05444158_3631 | Hydroxymethylpyrimidine kinase. | Sulfur carrier protein ThiS. | 0.954 |
SDR83897.1 | SDT30580.1 | SAMN05444158_0161 | SAMN05444158_5314 | Hydroxymethylpyrimidine kinase. | Adenylyltransferase and sulfurtransferase. | 0.850 |
SDR83897.1 | thiC | SAMN05444158_0161 | SAMN05444158_3635 | Hydroxymethylpyrimidine kinase. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.996 |
SDR83897.1 | thiG | SAMN05444158_0161 | SAMN05444158_3633 | Hydroxymethylpyrimidine kinase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.963 |
SDS29384.1 | SDS72935.1 | SAMN05444158_1611 | SAMN05444158_2995 | Cysteine desulfurase. | Ankyrin repeat. | 0.567 |
SDS29384.1 | SDT30580.1 | SAMN05444158_1611 | SAMN05444158_5314 | Cysteine desulfurase. | Adenylyltransferase and sulfurtransferase. | 0.908 |
SDS29384.1 | SDT48160.1 | SAMN05444158_1611 | SAMN05444158_6371 | Cysteine desulfurase. | Molybdopterin synthase subunit MoaD. | 0.615 |
SDS29384.1 | thiG | SAMN05444158_1611 | SAMN05444158_3633 | Cysteine desulfurase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.535 |
SDS72935.1 | SDR83897.1 | SAMN05444158_2995 | SAMN05444158_0161 | Ankyrin repeat. | Hydroxymethylpyrimidine kinase. | 0.518 |
SDS72935.1 | SDS29384.1 | SAMN05444158_2995 | SAMN05444158_1611 | Ankyrin repeat. | Cysteine desulfurase. | 0.567 |
SDS72935.1 | SDT27607.1 | SAMN05444158_2995 | SAMN05444158_5151 | Ankyrin repeat. | Hypothetical protein. | 0.775 |
SDS72935.1 | SDT30580.1 | SAMN05444158_2995 | SAMN05444158_5314 | Ankyrin repeat. | Adenylyltransferase and sulfurtransferase. | 0.856 |
SDS72935.1 | alaS | SAMN05444158_2995 | SAMN05444158_0311 | Ankyrin repeat. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.914 |
SDS90468.1 | SDR83897.1 | SAMN05444158_3631 | SAMN05444158_0161 | Sulfur carrier protein ThiS. | Hydroxymethylpyrimidine kinase. | 0.954 |
SDS90468.1 | SDT30580.1 | SAMN05444158_3631 | SAMN05444158_5314 | Sulfur carrier protein ThiS. | Adenylyltransferase and sulfurtransferase. | 0.988 |
SDS90468.1 | SDT48149.1 | SAMN05444158_3631 | SAMN05444158_6370 | Sulfur carrier protein ThiS. | Molybdopterin synthase subunit MoaE. | 0.547 |
SDS90468.1 | SDT48160.1 | SAMN05444158_3631 | SAMN05444158_6371 | Sulfur carrier protein ThiS. | Molybdopterin synthase subunit MoaD. | 0.627 |
SDS90468.1 | thiC | SAMN05444158_3631 | SAMN05444158_3635 | Sulfur carrier protein ThiS. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.954 |
SDS90468.1 | thiG | SAMN05444158_3631 | SAMN05444158_3633 | Sulfur carrier protein ThiS. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
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