STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT31027.1Glutamate carboxypeptidase. (377 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.787
SDT11625.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
  
     0.680
SDT26175.1
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
 0.633
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
  
 0.591
SDT31048.1
Transcriptional regulator, XRE family.
       0.541
SDR80487.1
FAD/FMN-containing dehydrogenase.
   
 0.538
SDS70422.1
Aminopeptidase N.
   
 0.533
SDS82564.1
NADPH-dependent glutamate synthase beta chain.
  
 
  0.533
SDS98301.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
  
  
 0.532
SDT00961.1
Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03.
 
  
  0.527
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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