STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT42061.1Alkylated DNA repair dioxygenase AlkB. (210 aa)    
Predicted Functional Partners:
SDT44681.1
Uncharacterized conserved protein.
  
     0.646
SDR99792.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.625
SDT42046.1
Hypothetical protein.
 
     0.562
SDS44334.1
SnoaL-like domain-containing protein.
  
     0.541
SDT09972.1
SnoaL-like polyketide cyclase.
  
     0.537
SDS70078.1
Hypothetical protein.
  
     0.516
SDT09913.1
AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase.
  
  
 0.494
SDR94592.1
Hypothetical protein.
  
     0.480
SDT55968.1
SnoaL-like polyketide cyclase.
  
     0.477
SDS38087.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.457
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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