STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT42619.1DoxX-like family protein. (137 aa)    
Predicted Functional Partners:
SDT42636.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.721
SDT42586.1
Uncharacterized conserved protein.
 
     0.654
SDT42596.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.638
SDS30641.1
Hypothetical protein.
 
     0.598
SDT42655.1
PhnB protein.
  
    0.595
SDR85861.1
Hypothetical protein.
 
     0.540
SDS37496.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.528
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.