STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT48098.1Membrane protein. (375 aa)    
Predicted Functional Partners:
SDT48111.1
Putative Holin-X, holin superfamily III.
       0.781
SDT48084.1
cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF.
       0.603
SDT26100.1
General stress protein 26.
 
    0.599
SDT48071.1
HAD-superfamily class IIA hydrolase, TIGR01459.
       0.580
SDT48127.1
Beta-alanine--pyruvate transaminase.
     
 0.531
SDT54631.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
     0.511
SDT32332.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
     0.505
SDS45671.1
PAS domain S-box-containing protein.
  
     0.484
SDT43423.1
Ca2+:H+ antiporter.
  
    0.476
SDR93592.1
Signal transduction histidine kinase.
 
     0.464
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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