STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT57240.15-carboxymethyl-2-hydroxymuconate isomerase. (115 aa)    
Predicted Functional Partners:
SDS48686.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
  
  
  0.798
SDS62078.1
2-oxohept-3-enedioate hydratase.
 
 
 0.718
SDT57415.1
2-oxohept-3-enedioate hydratase.
 
 
 0.702
SDR89808.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.692
SDS61840.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.692
SDT27916.1
2-keto-4-pentenoate hydratase.
 
 
 0.672
SDS83724.1
2-oxo-3-hexenedioate decarboxylase/2-keto-4-pentenoate hydratase.
 
 
 0.666
SDT57252.1
Transcriptional regulator, IclR family.
       0.655
SDR85889.1
2-oxo-3-hexenedioate decarboxylase/2-keto-4-pentenoate hydratase.
  
 
 0.620
SDT57266.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
       0.613
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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