STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT60502.1Predicted arabinose efflux permease, MFS family. (401 aa)    
Predicted Functional Partners:
SDT60520.1
Transcriptional regulator, PadR family.
 
     0.558
SDT45451.1
Gluconate 2-dehydrogenase gamma chain.
  
     0.553
SDT54679.1
Gluconate 2-dehydrogenase gamma chain.
  
     0.533
SDT45437.1
Gluconate 2-dehydrogenase alpha chain.
  
  
  0.518
SDS70256.1
Gluconate 2-dehydrogenase gamma chain.
  
     0.508
SDT54666.1
Gluconate 2-dehydrogenase alpha chain.
  
  
  0.500
SDS70238.1
Gluconate 2-dehydrogenase alpha chain.
  
  
  0.478
SDS83308.1
Uncharacterized membrane protein YccC.
  
    0.464
SDT52244.1
Anthranilate synthase, component I.
    
  0.452
SDR81917.1
Hexulose-6-phosphate isomerase.
   
    0.448
Your Current Organism:
Bradyrhizobium canariense
NCBI taxonomy Id: 255045
Other names: B. canariense, Bradyrhizobium canariense Vinuesa et al. 2005, Bradyrhizobium sp. BTA-1, LMG 22265, LMG:22265, NBRC 103049, strain BTA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.