STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900014995_00546Unannotated protein. (347 aa)    
Predicted Functional Partners:
GCA_900014995_00547
Unannotated protein.
 
 
 0.994
GCA_900014995_03743
Unannotated protein.
 
 
 0.986
GCA_900014995_03742
Unannotated protein.
  
  
 
0.849
GCA_900014995_00548
Unannotated protein.
 
  0.822
GCA_900014995_00281
Unannotated protein.
 
 
  0.780
GCA_900014995_03744
Unannotated protein.
 
  0.735
GCA_900014995_03413
Unannotated protein.
 
  0.723
GCA_900014995_03654
Unannotated protein.
 
 
  0.675
GCA_900014995_02466
Unannotated protein.
 
 
  0.630
GCA_900014995_00701
Unannotated protein.
  
 
 0.533
Your Current Organism:
Pseudoclavibacter helvolus
NCBI taxonomy Id: 255205
Other names: ATCC 13715, CCUG 43303, DSM 20419, IAM 14726, JCM 9491, NBRC 15775, P. helvolus, Pseudoclavibacter helvolus Manaia et al. 2004, Zimmermannella helvola, Zimmermannella helvola Lin et al. 2004
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