STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900014995_01553Unannotated protein. (244 aa)    
Predicted Functional Partners:
GCA_900014995_01554
Unannotated protein.
       0.737
GCA_900014995_01963
Unannotated protein.
   
    0.598
GCA_900014995_02964
Unannotated protein.
   
    0.598
GCA_900014995_03082
Unannotated protein.
    
  0.594
GCA_900014995_00437
Unannotated protein.
  
    0.552
GCA_900014995_00458
Unannotated protein.
  
 
  0.513
GCA_900014995_02732
Unannotated protein.
  
    0.510
GCA_900014995_01552
Unannotated protein.
       0.509
GCA_900014995_01291
Unannotated protein.
  
 
  0.485
GCA_900014995_02108
Unannotated protein.
  
    0.471
Your Current Organism:
Pseudoclavibacter helvolus
NCBI taxonomy Id: 255205
Other names: ATCC 13715, CCUG 43303, DSM 20419, IAM 14726, JCM 9491, NBRC 15775, P. helvolus, Pseudoclavibacter helvolus Manaia et al. 2004, Zimmermannella helvola, Zimmermannella helvola Lin et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.