STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900014995_01852Unannotated protein. (456 aa)    
Predicted Functional Partners:
GCA_900014995_01860
Unannotated protein.
  
 0.996
GCA_900014995_01863
Unannotated protein.
 
 0.996
GCA_900014995_01862
Unannotated protein.
 
  
 0.968
GCA_900014995_02409
Unannotated protein.
     
 0.961
GCA_900014995_02667
Unannotated protein.
 
 
 0.955
GCA_900014995_01853
Unannotated protein.
 
  
 0.934
GCA_900014995_01854
Unannotated protein.
 
   
 0.869
GCA_900014995_01861
Unannotated protein.
 
  
 0.778
GCA_900014995_01859
Unannotated protein.
 
  
 0.681
GCA_900014995_01925
Unannotated protein.
 
  
 0.645
Your Current Organism:
Pseudoclavibacter helvolus
NCBI taxonomy Id: 255205
Other names: ATCC 13715, CCUG 43303, DSM 20419, IAM 14726, JCM 9491, NBRC 15775, P. helvolus, Pseudoclavibacter helvolus Manaia et al. 2004, Zimmermannella helvola, Zimmermannella helvola Lin et al. 2004
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