STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900014995_02435Unannotated protein. (194 aa)    
Predicted Functional Partners:
GCA_900014995_02436
Unannotated protein.
      0.882
GCA_900014995_03069
Unannotated protein.
    
  0.782
GCA_900014995_02437
Unannotated protein.
       0.773
GCA_900014995_00088
Unannotated protein.
  
   
 0.771
GCA_900014995_01148
Unannotated protein.
  
   
 0.766
GCA_900014995_03070
Unannotated protein.
    
  0.754
GCA_900014995_01679
Unannotated protein.
  
     0.747
GCA_900014995_00639
Unannotated protein.
    
  0.694
GCA_900014995_03030
Unannotated protein.
    
  0.694
GCA_900014995_01617
Unannotated protein.
    
  0.611
Your Current Organism:
Pseudoclavibacter helvolus
NCBI taxonomy Id: 255205
Other names: ATCC 13715, CCUG 43303, DSM 20419, IAM 14726, JCM 9491, NBRC 15775, P. helvolus, Pseudoclavibacter helvolus Manaia et al. 2004, Zimmermannella helvola, Zimmermannella helvola Lin et al. 2004
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