nfo protein (Fictibacillus arsenicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nfo

Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (297 aa)

Predicted Functional Partners:

ANX11507.1

0.926

ANX12933.1

0.773

nth

0.636

ANX13047.1

0.564

ANX12934.1

0.484

ANX12483.1

0.451

polA

0.451

recU

0.402

ANX13141.1

0.402

Your Current Organism:

Fictibacillus arsenicus

NCBI taxonomy Id: 255247
Other names: Bacillus arsenicus, Bacillus arsenicus Shivaji et al. 2005, Bacillus sp. JP44SK14, DSM 15822, F. arsenicus, Fictibacillus arsenicus (Shivaji et al. 2005) Glaeser et al. 2013, JCM 12167, MTCC 4380, strain Con a/3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANX11507.1	ANX12483.1	ABE41_005765	ABE41_010720	Endonuclease IV.	5'-3' exonuclease.	0.451
ANX11507.1	ANX13047.1	ABE41_005765	ABE41_013630	Endonuclease IV.	single-stranded-DNA-specific exonuclease RecJ.	0.564
ANX11507.1	ANX13141.1	ABE41_005765	ABE41_014115	Endonuclease IV.	Hypothetical protein.	0.402
ANX11507.1	nfo	ABE41_005765	ABE41_013045	Endonuclease IV.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.926
ANX11507.1	nth	ABE41_005765	ABE41_011650	Endonuclease IV.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.636
ANX11507.1	polA	ABE41_005765	ABE41_014275	Endonuclease IV.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.451
ANX12483.1	ANX11507.1	ABE41_010720	ABE41_005765	5'-3' exonuclease.	Endonuclease IV.	0.451
ANX12483.1	ANX13047.1	ABE41_010720	ABE41_013630	5'-3' exonuclease.	single-stranded-DNA-specific exonuclease RecJ.	0.416
ANX12483.1	ANX13141.1	ABE41_010720	ABE41_014115	5'-3' exonuclease.	Hypothetical protein.	0.907
ANX12483.1	nfo	ABE41_010720	ABE41_013045	5'-3' exonuclease.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.451
ANX12483.1	nth	ABE41_010720	ABE41_011650	5'-3' exonuclease.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.635
ANX12483.1	polA	ABE41_010720	ABE41_014275	5'-3' exonuclease.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.971
ANX12933.1	ANX12934.1	ABE41_013050	ABE41_013055	DEAD/DEAH box helicase.	Hypothetical protein.	0.573
ANX12933.1	nfo	ABE41_013050	ABE41_013045	DEAD/DEAH box helicase.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.773
ANX12934.1	ANX12933.1	ABE41_013055	ABE41_013050	Hypothetical protein.	DEAD/DEAH box helicase.	0.573
ANX12934.1	nfo	ABE41_013055	ABE41_013045	Hypothetical protein.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.484
ANX13047.1	ANX11507.1	ABE41_013630	ABE41_005765	single-stranded-DNA-specific exonuclease RecJ.	Endonuclease IV.	0.564
ANX13047.1	ANX12483.1	ABE41_013630	ABE41_010720	single-stranded-DNA-specific exonuclease RecJ.	5'-3' exonuclease.	0.416
ANX13047.1	ANX13141.1	ABE41_013630	ABE41_014115	single-stranded-DNA-specific exonuclease RecJ.	Hypothetical protein.	0.461
ANX13047.1	nfo	ABE41_013630	ABE41_013045	single-stranded-DNA-specific exonuclease RecJ.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.564

page 1 of 3

Server load: medium (54%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About