STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Myrod_2435Unannotated protein. (379 aa)    
Predicted Functional Partners:
Myrod_2436
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.992
Myrod_1119
Unannotated protein.
 
 0.974
Myrod_3651
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.912
Myrod_1775
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.905
Myrod_3652
Unannotated protein.
  
 0.874
Myrod_1774
Unannotated protein.
  
 0.874
Myrod_0916
Unannotated protein.
  
    0.608
Myrod_0582
Unannotated protein.
  
     0.595
tgt
Unannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...]
       0.566
Myrod_2439
Unannotated protein.
       0.486
Your Current Organism:
Myroides odoratus
NCBI taxonomy Id: 256
Other names: ATCC 4651, CCUG 7321, CIP 103105, DSM 2801, Flavobacterium odoratum, IAM 14199, IFO 14945, JCM 7458, M. odoratus, NBRC 14945, NCTC 11036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.