STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Myrod_2326Unannotated protein. (586 aa)    
Predicted Functional Partners:
Myrod_0487
Unannotated protein.
      0.615
Myrod_2325
Unannotated protein.
       0.606
Myrod_2067
Unannotated protein.
 
     0.560
Myrod_1086
Unannotated protein.
   
    0.548
Myrod_2327
Unannotated protein.
       0.542
Myrod_1087
Unannotated protein.
   
    0.542
secD
Unannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
   
 0.507
GCA_001549985_00634
Unannotated protein.
 
  
 0.450
GCA_001549985_01620
Unannotated protein.
   
    0.441
Myrod_2044
Unannotated protein.
  
     0.408
Your Current Organism:
Myroides odoratus
NCBI taxonomy Id: 256
Other names: ATCC 4651, CCUG 7321, CIP 103105, DSM 2801, Flavobacterium odoratum, IAM 14199, IFO 14945, JCM 7458, M. odoratus, NBRC 14945, NCTC 11036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.