Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Myrod_0976 | Myrod_0977 | GCA_001549985_01412 | GCA_001549985_01413 | Unannotated protein. | Unannotated protein. | 0.976 |
Myrod_0976 | Myrod_1334 | GCA_001549985_01412 | GCA_001549985_03085 | Unannotated protein. | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.995 |
Myrod_0976 | Myrod_1915 | GCA_001549985_01412 | GCA_001549985_02099 | Unannotated protein. | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.958 |
Myrod_0976 | Myrod_2210 | GCA_001549985_01412 | GCA_001549985_00347 | Unannotated protein. | Unannotated protein. | 0.995 |
Myrod_0976 | nusA | GCA_001549985_01412 | GCA_001549985_02111 | Unannotated protein. | Unannotated protein; Participates in both transcription termination and antitermination. | 0.969 |
Myrod_0976 | rplF | GCA_001549985_01412 | GCA_001549985_03217 | Unannotated protein. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.974 |
Myrod_0976 | rpoA | GCA_001549985_01412 | GCA_001549985_03227 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
Myrod_0976 | rpoB | GCA_001549985_01412 | GCA_001549985_03164 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
Myrod_0976 | rpoC | GCA_001549985_01412 | GCA_001549985_03165 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
Myrod_0976 | rpsB | GCA_001549985_01412 | GCA_001549985_00994 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.978 |
Myrod_0977 | Myrod_0976 | GCA_001549985_01413 | GCA_001549985_01412 | Unannotated protein. | Unannotated protein. | 0.976 |
Myrod_1334 | Myrod_0976 | GCA_001549985_03085 | GCA_001549985_01412 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein. | 0.995 |
Myrod_1334 | nusA | GCA_001549985_03085 | GCA_001549985_02111 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein; Participates in both transcription termination and antitermination. | 0.898 |
Myrod_1334 | rplF | GCA_001549985_03085 | GCA_001549985_03217 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.407 |
Myrod_1334 | rpoA | GCA_001549985_03085 | GCA_001549985_03227 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
Myrod_1334 | rpoB | GCA_001549985_03085 | GCA_001549985_03164 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
Myrod_1334 | rpoC | GCA_001549985_03085 | GCA_001549985_03165 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
Myrod_1334 | rpsB | GCA_001549985_03085 | GCA_001549985_00994 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.618 |
Myrod_1915 | Myrod_0976 | GCA_001549985_02099 | GCA_001549985_01412 | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Unannotated protein. | 0.958 |
Myrod_1915 | rpoA | GCA_001549985_02099 | GCA_001549985_03227 | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.939 |
page 1 of 4