Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Myrod_0819 | ybeY | GCA_001549985_02804 | GCA_001549985_01839 | Unannotated protein. | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.921 |
Myrod_0922 | ybeY | GCA_001549985_02896 | GCA_001549985_01839 | Unannotated protein; Belongs to the GcvP family. | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.874 |
Myrod_1446 | Myrod_1970 | GCA_001549985_01030 | GCA_001549985_00623 | Unannotated protein. | Unannotated protein. | 0.948 |
Myrod_1446 | rplK | GCA_001549985_01030 | GCA_001549985_03160 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.621 |
Myrod_1446 | rplM | GCA_001549985_01030 | GCA_001549985_00992 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.648 |
Myrod_1446 | rplO | GCA_001549985_01030 | GCA_001549985_03221 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.612 |
Myrod_1446 | rplQ | GCA_001549985_01030 | GCA_001549985_03228 | Unannotated protein. | Unannotated protein. | 0.641 |
Myrod_1446 | rplU | GCA_001549985_01030 | GCA_001549985_00326 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.657 |
Myrod_1446 | rpsQ | GCA_001549985_01030 | GCA_001549985_03211 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
Myrod_1446 | ybeY | GCA_001549985_01030 | GCA_001549985_01839 | Unannotated protein. | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.999 |
Myrod_1970 | Myrod_1446 | GCA_001549985_00623 | GCA_001549985_01030 | Unannotated protein. | Unannotated protein. | 0.948 |
Myrod_1970 | rplK | GCA_001549985_00623 | GCA_001549985_03160 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.621 |
Myrod_1970 | rplM | GCA_001549985_00623 | GCA_001549985_00992 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.648 |
Myrod_1970 | rplO | GCA_001549985_00623 | GCA_001549985_03221 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.612 |
Myrod_1970 | rplQ | GCA_001549985_00623 | GCA_001549985_03228 | Unannotated protein. | Unannotated protein. | 0.641 |
Myrod_1970 | rplU | GCA_001549985_00623 | GCA_001549985_00326 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.657 |
Myrod_1970 | rpsQ | GCA_001549985_00623 | GCA_001549985_03211 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
Myrod_1970 | ybeY | GCA_001549985_00623 | GCA_001549985_01839 | Unannotated protein. | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.999 |
rplK | Myrod_1446 | GCA_001549985_03160 | GCA_001549985_01030 | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Unannotated protein. | 0.621 |
rplK | Myrod_1970 | GCA_001549985_03160 | GCA_001549985_00623 | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Unannotated protein. | 0.621 |
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