Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Myrod_1440 | Myrod_1651 | GCA_001549985_01024 | GCA_001549985_03615 | Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Unannotated protein. | 0.867 |
Myrod_1651 | Myrod_1440 | GCA_001549985_03615 | GCA_001549985_01024 | Unannotated protein. | Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.867 |
Myrod_1651 | Myrod_1653 | GCA_001549985_03615 | GCA_001549985_03613 | Unannotated protein. | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.977 |
Myrod_1651 | Myrod_1654 | GCA_001549985_03615 | GCA_001549985_03612 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.993 |
Myrod_1651 | Myrod_1656 | GCA_001549985_03615 | GCA_001549985_03610 | Unannotated protein. | Unannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.995 |
Myrod_1651 | Myrod_1657 | GCA_001549985_03615 | GCA_001549985_03609 | Unannotated protein. | Unannotated protein. | 0.953 |
Myrod_1651 | Myrod_2389 | GCA_001549985_03615 | GCA_001549985_00157 | Unannotated protein. | Unannotated protein; Belongs to the arginase family. | 0.894 |
Myrod_1651 | Myrod_3242 | GCA_001549985_03615 | GCA_001549985_02713 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.901 |
Myrod_1651 | argB | GCA_001549985_03615 | GCA_001549985_03614 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.973 |
Myrod_1651 | argC | GCA_001549985_03615 | GCA_001549985_03611 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.976 |
Myrod_1651 | argH | GCA_001549985_03615 | GCA_001549985_03616 | Unannotated protein. | Unannotated protein. | 0.966 |
Myrod_1653 | Myrod_1651 | GCA_001549985_03613 | GCA_001549985_03615 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein. | 0.977 |
Myrod_1653 | Myrod_1654 | GCA_001549985_03613 | GCA_001549985_03612 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.987 |
Myrod_1653 | Myrod_1656 | GCA_001549985_03613 | GCA_001549985_03610 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.997 |
Myrod_1653 | Myrod_1657 | GCA_001549985_03613 | GCA_001549985_03609 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein. | 0.944 |
Myrod_1653 | Myrod_3242 | GCA_001549985_03613 | GCA_001549985_02713 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.774 |
Myrod_1653 | argB | GCA_001549985_03613 | GCA_001549985_03614 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.997 |
Myrod_1653 | argC | GCA_001549985_03613 | GCA_001549985_03611 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.996 |
Myrod_1653 | argH | GCA_001549985_03613 | GCA_001549985_03616 | Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Unannotated protein. | 0.996 |
Myrod_1654 | Myrod_1651 | GCA_001549985_03612 | GCA_001549985_03615 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein. | 0.993 |
page 1 of 4