STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0151Similar to Streptomyces coelicolor conserved hypothetical protein SC10F4.36c TR:Q9F3M5 (EMBL:AL450350) (94 aa) fasta scores: E(): 8.6e-07, 38.2% id in 89 aa, and to Mycobacterium tuberculosis hypothetical 11.0 kDa protein Rv3204 or MTCY07D11.22c TR:O05862 (EMBL:Z95120) (101 aa) fasta scores: E(): 0.00013, 40% id in 95 aa. (101 aa)    
Predicted Functional Partners:
DIP0149
Conserved hypothetical protein (pseudogene); Pseudogene. Similar to the plasmid borne Corynebacterium striatum YtpG TR:Q9FB50 (EMBL:AF024666) (76 aa) fasta scores: E(): 3.2e-09, 78.46% id in 65 aa. Presents a frameshift at residue 50.
     
 0.875
DIP0150
Conserved hypothetical protein; Similar to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein MT0934.1 TR:AAK45182 (EMBL:AE006980) (257 aa) fasta scores: E(): 3.3e-32, 41.96% id in 255 aa.
       0.842
DIP0722
Similar to Streptomyces coelicolor putative ATP-dependent DNA helicase 2SC3B6.07 TR:Q9FCK5 (EMBL:AL390968) (1159 aa) fasta scores: E(): 6.2e-29, 32.21% id in 1161 aa; Belongs to the helicase family. UvrD subfamily.
 
     0.442
DIP2297
Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 31.9 kDa protein Rv2319c or MT2382 or MTCY3G12.15 SWALL:YN19_MYCTU (SWALL:P71893) (292 aa) fasta scores: E(): 4.3e-21, 28% id in 300 aa.
  
     0.428
DIP1840
Hypothetical protein; Poor database matches. C-terminus is similar to the C-terminal regions of Streptomyces coelicolor putative nicotinamidase SCE19A.18 TR:Q9S2G3 (EMBL:AL096852) (195 aa) fasta scores: E(): 6.4e-06, 33.33% id in 105 aa, and Mycobacterium avium pyrazinamidase/nicotinamidase PncA TR:P94914 (EMBL:U80820) (187 aa) fasta scores: E(): 2.8e-05, 36% id in 125 aa.
 
     0.427
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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