STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0179Putative membrane protein; Similar to Staphylococcus aureus subsp aureus Mu50 hypothetical 57.2 kDa protein SAV1916 TR:BAB58078 (EMBL:AP003363) (520 aa) fasta scores: E(): 3.6e-71, 41.38% id in 505 aa, and to Helicobacter pylori sodium-dependent transporter HP0214 TR:O25003 (EMBL:AE000541) (552 aa) fasta scores: E(): 9.3e-34, 50.45% id in 555 aa. (524 aa)    
Predicted Functional Partners:
DIP0293
Putative Na+/H+ antiporter subunit; Similar to Pseudomonas aeruginosa probable NADH dehydrogenase PA1054 TR:Q9I4S0 (EMBL:AE004537) (933 aa) fasta scores: E(): 3e-85, 34.395% id in 942 aa, and to Rhizobium meliloti pH adaptation potassium efflux system transmembrane protein TR:CAC47489 (EMBL:AL591792) (999 aa) fasta scores: E(): 5.9e-61, 31.818% id in 968 aa, and to Staphylococcus aureus Na+/H+ antiporter subunit MnhA TR:Q9ZNG6 (EMBL:AB015981) (801 aa) fasta scores: E(): 6.5e-33, 31.750% id in 800 aa.
  
  
 0.604
accDA
Similar to Corynebacterium glutamicum putative carboxyltransferase subunit of acetyl-CoA carboxylase AccDA TR:CAC42827 (EMBL:Y17592) (491 aa) fasta scores: E(): 8.9e-58, 55.31% id in 499 aa, and to Escherichia coli acetyl-coenzyme A carboxylase carboxyl transferase subunit beta AccD or DedB or Usg or B2316 or Z3578 or ECS3200 SW:ACCD_ECOLI (P08193) (304 aa) fasta scores: E(): 8.6e-22, 34.89% id in 235 aa.
     
 0.597
ptsG
Similar to Corynebacterium glutamicum PTS system, glucose-specific IIABC component PtsG SWALL:PTGA_CORGL (SWALL:Q45298) (674 aa) fasta scores: E(): 2.8e-59, 44.91% id in 688 aa, and to Staphylococcus xylosus PTS system, sucrose-specific IIBC component ScrA SWALL:PTSB_STAXY (SWALL:P51184) (480 aa) fasta scores: E(): 8e-26, 27.73% id in 494 aa.
  
  
 0.590
DIP1750
Similar to Vibrio cholerae glutathione-regulated potassium-efflux system protein KefB, putative VC0992 TR:Q9KTB1 (EMBL:AE004180) (528 aa) fasta scores: E(): 1.3e-37, 33.26% id in 514 aa; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.420
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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