STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0272Putative antibiotic resistance protein (membrane protein); Similar to Staphylococcus aureus SA0132 protein TR:Q99X78 (EMBL:AP003129) (450 aa) fasta scores: E(): 3.5e-67, 46.1% id in 436 aa, and to Bacillus subtilis tetracycline resistance protein TetB or Tet SW:TCRB_BACSU (P23054) (458 aa) fasta scores: E(): 1.3e-23, 26.3% id in 403 aa. (454 aa)    
Predicted Functional Partners:
deoD
Putative transposase (pseudogene); Possible inverted repeat.
       0.842
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.769
DIP0274
Putative mutase; Similar to Streptomyces coelicolor putative phosphomannomutase SCK13.08c TR:Q9AD82 (EMBL:AL512667) (549 aa) fasta scores: E(): 7.9e-86, 46.75% id in 554 aa.
       0.769
DIP0267
Putative regulatory protein; Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 6.6e-43, 42.9% id in 303 aa.
 
     0.577
DIP0275
Putative membrane protein; Similar to Streptomyces coelicolor putative integral membrane protein 2SCI34.05 TR:Q9EWX4 (EMBL:AL445403) (396 aa) fasta scores: E(): 1.3e-08, 28.77% id in 358 aa.
       0.534
DIP1082
Transmembrane efflux protein, major facilitator family; Similar to Mycobacterium tuberculosis CDC1551 drug transporter MT1289 TR:AAK45547 (EMBL:AE007004) (579 aa) fasta scores: E(): 9.3e-70, 43.87% id in 449 aa, and to Streptomyces coelicolor putative transmembrane efflux protein SCD82.12 TR:Q9L0L9 (EMBL:AL160431) (490 aa) fasta scores: E(): 5.7e-43, 31.79% id in 456 aa, and to Streptomyces glaucescens tetracenomycin C resistance and export protein TcmA SW:TCMA_STRGA (P39886) (538 aa) fasta scores: E(): 3.5e-39, 31.29% id in 425 aa; Belongs to the major facilitator superfamily.
  
     0.473
DIP1941
Putative membrane protein; Similar to Salmonella typhimurium methyl viologen resistance protein SmvA SW:SMVA_SALTY (P37594) (496 aa) fasta scores: E(): 4e-41, 33.4% id in 488 aa, and to Pseudomonas aeruginosa probable MFS transporter PA1282 TR:Q9I462 (EMBL:AE004557) (501 aa) fasta scores: E(): 1.2e-55, 41.17% id in 493 aa.
 
     0.467
DIP0936
Similar to Streptomyces coelicolor putative integral membrane transport protein SCC8A.02c TR:Q9KY46 (EMBL:AL356892) (689 aa) fasta scores: E(): 8.5e-70, 42.83% id in 523 aa, and to Mycobacterium tuberculosis CDC1551 drug transporter MT1926 TR:AAK46198 (EMBL:AE007049) (687 aa) fasta scores: E(): 1.1e-57, 37.45% id in 518 aa; Belongs to the major facilitator superfamily.
  
     0.411
DIP0284
Similar to Escherichia coli O157:H7 putative periplasmic-iron-binding protein ECS0415 TR:BAB33838 (EMBL:AP002551) (343 aa) fasta scores: E(): 5.5e-19, 27.139% id in 339 aa, and to Actinobacillus pleuropneumoniae AfuA protein TR:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 4.2e-16, 26.280% id in 293 aa, and to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SW:SFUA_SERMA (P21408) (338 aa) fasta scores: E(): 0.00026, 20.000% id in 290 aa.
  
    0.405
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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