STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0283Putative transport system permease (iron); Similar to Treponema hyodysenteriae putative permease ShiD TR:O54371 (EMBL:U75349) (277 aa) fasta scores: E(): 0.0013, 21.739% id in 184 aa, and to Escherichia coli O157:H7 EDL933 putative transport system permease protein YabK TR:AAG54371 (EMBL:AE005183) (536 aa) fasta scores: E(): 0.019, 21.995% id in 441 aa. (517 aa)    
Predicted Functional Partners:
DIP0284
Similar to Escherichia coli O157:H7 putative periplasmic-iron-binding protein ECS0415 TR:BAB33838 (EMBL:AP002551) (343 aa) fasta scores: E(): 5.5e-19, 27.139% id in 339 aa, and to Actinobacillus pleuropneumoniae AfuA protein TR:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 4.2e-16, 26.280% id in 293 aa, and to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SW:SFUA_SERMA (P21408) (338 aa) fasta scores: E(): 0.00026, 20.000% id in 290 aa.
  
 
 0.991
DIP0282
Similar to Vibrio cholerae iron (III) ABC transporter, ATP-binding protein VC0610 TR:Q9KUB3 (EMBL:AE004146) (343 aa) fasta scores: E(): 7e-18, 34.743% id in 331 aa, and to Archaeoglobus fulgidus branched-chain amino acid ABC transporter, ATP-binding protein AF0221 TR:O30018 (EMBL:AE001090) (224 aa) fasta scores: E(): 9.2e-17, 34.562% id in 217 aa.
  
 
 0.975
DIP0285
Similar to Bacillus subtilis glycerol-3-phosphate transporter GlpT SW:GLPT_BACSU (P37948) (444 aa) fasta scores: E(): 1.4e-74, 45.434% id in 438 aa, and to Escherichia coli glycerol-3-phosphate transporter GlpT or B2240 SW:GLPT_ECOLI (P08194) (452 aa) fasta scores: E(): 4.2e-74, 44.295% id in 447 aa.
  
    0.582
DIP0287
Similar to Escherichia coli sensor protein RcsC or B2218 SW:RCSC_ECOLI (P14376) (933 aa) fasta scores: E(): 5.5e-10, 26.339% id in 224 aa, and to Pseudomonas syringae sensor protein GacS or LemA SW:GACS_PSESY (P48027) (907 aa) fasta scores: E(): 2e-09, 27.530% id in 247 aa.
  
    0.400
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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